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Now showing items 1-20 of 42

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    A Comprehensive Survey of Tools and Software for Active Subnetwork Identification 

    Nguyen, Hung; Shrestha, Sangam; Tran, Duc; Shafi, Adib; Draghici, Sorin; Nguyen, Tin (2019)
    A recent focus of computational biology has been to integrate the complementary information available in molecular profiles as well as in multiple network databases in order to identify connected regions that show significant ...
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    A Multi-Cohort and Multi-Omics Meta-Analysis Framework to Identify Network-Based Gene Signatures 

    Shafi, Adib; Nguyen, Tin; Peyvandipour, Azam; Nguyen, Hung; Draghici, Sorin (2019)
    Although massive amounts of condition-specific molecular profiles are being accumulated in public repositories every day, meaningful interpretation of these data remains a major challenge. In an effort to identify the ...
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    A neonicotinoid pesticide impairs foraging, but not learning, in free-flying bumblebees 

    Muth, F.; Leonard, A. S. (2019)
    Neonicotinoids are widely-used pesticides implicated in the decline of bees, known to have sub-lethal effects on bees' foraging and colony performance. One proposed mechanism for these negative effects is impairment to ...
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    A New Data Fusion Algorithm for Wireless Sensor Networks Inspired by Hesitant Fuzzy Entropy 

    Wang, Jiayao; Tawose, Olamide Timothy; Jiang, Linhua; Zhao, Dongfang (2019)
    The wireless sensor network (WSN) is mainly composed of a large number of sensor nodes that are equipped with limited energy and resources. Therefore, energy consumption in wireless sensor networks is one of the most ...
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    A Primer on Pulsed Power and Linear Transformer Drivers for High Energy Density Physics Applications 

    McBride, R. D.; Stygar, W. A.; Cuneo, M. E.; Sinars, D. B.; Mazarakis, M. G.; Leckbee, J. J.; Savage, M. E.; Hutsel, B. T.; Douglass, J. D.; Kiefer, M. L.; Oliver, B. V.; Laity, G. R.; Gomez, M. R.; Yager-Elorriaga, D. A.; Patel, S. G.; Kovalchuk, B. M.; Kim, A. A.; Gourdain, P.-A.; Bland, S. N.; Portillo, S.; Bott-Suzuki, S. C.; Beg, F. N.; Maron, Y.; Spielman, R. B.; Rose, D. V.; Welch, D. R.; Zier, J. C.; Schumer, J. W.; Greenly, J. B.; Covington, A. M.; Steiner, A. M.; Campbell, P. C.; Miller, S. M.; Woolstrum, J. M.; Ramey, N. B.; Shah, A. P.; Sporer, B. J.; Jordan, N. M.; Lau, Y. Y.; Gilgenbach, R. M. (2018)
    The objectives of this tutorial are as follows: 1) to help students and researchers develop a basic understanding of how pulsed-power systems are used to create high-energy-density (HED) matter
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    A signal timing assignment proposal for urban multi lane staged controlled signalised roundabouts 

    Murat, Yetis Sazi; Cakici, Ziya; Tian, Zong (2019)
    The relationship between the left-turning traffic volume and the storage area at signalised roundabouts is investigated, and a calculation procedure for signal timing is proposed in this paper. The parameters associated ...
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    An Ecological Function Approach to Managing Harmful Cyanobacteria in Three Oregon Lakes: Beyond Water Quality Advisories and Total Maximum Daily Loads (TMDLs) 

    Hall, Eric S.; Hall, Robert K.; Aron, Joan L.; Swanson, Sherman; Philbin, Michael J.; Schafer, Robin J.; Jones-Lepp, Tammy; Heggem, Daniel T.; Lin, John; Wilson, Eric; Kahan, Howard (2019)
    The Oregon Department of Environmental Quality (ODEQ) uses Total Maximum Daily Load (TMDL) calculations, and the associated regulatory process, to manage harmful cyanobacterial blooms (CyanoHABs) attributable to non-point ...
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    Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen 

    Menden, Michael P.; Wang, Dennis; Mason, Mike J.; Szalai, Bence; Bulusu, Krishna C.; Guan, Yuanfang; Yu, Thomas; Kang, Jaewoo; Jeon, Minji; Wolfinger, Russ; Nguyen, Tin; Zaslavskiy, Mikhail; Jang, In Sock; Ghazoui, Zara; Ahsen, Mehmet Eren; Vogel, Robert; Neto, Elias Chaibub; Norman, Thea; Tang, Eric K. Y.; Garnett, Mathew J.; Di Veroli, Giovanni Y.; Fawell, Stephen; Stolovitzky, Gustavo; Guinney, Justin; Dry, Jonathan R.; Saez-Rodriguez, Julio; Abante, Jordi; Abecassis, Barbara Schmitz; Aben, Nanne; Aghamirzaie, Delasa; Aittokallio, Tero; Akhtari, Farida S.; Al-lazikani, Bissan; Alam, Tanvir; Allam, Amin; Allen, Chad; de Almeida, Mariana Pelicano; Altarawy, Doaa; Alves, Vinicius; Amadoz, Alicia; Anchang, Benedict; Antolin, Albert A.; Ash, Jeremy R.; Romeo Aznar, Victoria; Ba-alawi, Wail; Bagheri, Moeen; Bajic, Vladimir; Ball, Gordon; Ballester, Pedro J.; Baptista, Delora; Bare, Christopher; Bateson, Mathilde; Bender, Andreas; Bertrand, Denis; Wijayawardena, Bhagya; Boroevich, Keith A.; Bosdriesz, Evert; Bougouffa, Salim; Bounova, Gergana; Brouwer, Thomas; Bryant, Barbara; Calaza, Manuel; Calderone, Alberto; Calza, Stefano; Capuzzi, Stephen; Carbonell-Caballero, Jose; Carlin, Daniel; Carter, Hannah; Castagnoli, Luisa; Celebi, Remzi; Cesareni, Gianni; Chang, Hyeokyoon; Chen, Guocai; Chen, Haoran; Chen, Huiyuan; Cheng, Lijun; Chernomoretz, Ariel; Chicco, Davide; Cho, Kwang-Hyun; Cho, Sunghwan; Choi, Daeseon; Choi, Jaejoon; Choi, Kwanghun; Choi, Minsoo; De Cock, Martine; Coker, Elizabeth; Cortes-Ciriano, Isidro; Cserzo, Miklos; Cubuk, Cankut; Curtis, Christina; Van Daele, Dries; Dang, Cuong C.; Dijkstra, Tjeerd; Dopazo, Joaquin; Draghici, Sorin; Drosou, Anastasios; Dumontier, Michel; Ehrhart, Friederike; Eid, Fatma-Elzahraa; ElHefnawi, Mahmoud; Elmarakeby, Haitham; van Engelen, Bo; Engin, Hatice Billur; de Esch, Iwan; Evelo, Chris; Falcao, Andre O.; Farag, Sherif; Fernandez-Lozano, Carlos; Fisch, Kathleen; Flobak, Asmund; Fornari, Chiara; Foroushani, Amir B. K.; Fotso, Donatien Chedom; Fourches, Denis; Friend, Stephen; Frigessi, Arnoldo; Gao, Feng; Gao, Xiaoting; Gerold, Jeffrey M.; Gestraud, Pierre; Ghosh, Samik; Gillberg, Jussi; Godoy-Lorite, Antonia; Godynyuk, Lizzy; Godzik, Adam; Goldenberg, Anna; Gomez-Cabrero, David; Gonen, Mehmet; de Graaf, Chris; Gray, Harry; Grechkin, Maxim; Guimera, Roger; Guney, Emre; Haibe-Kains, Benjamin; Han, Younghyun; Hase, Takeshi; He, Di; He, Liye; Heath, Lenwood S.; Hellton, Kristoffer H.; Helmer-Citterich, Manuela; Hidalgo, Marta R.; Hidru, Daniel; Hill, Steven M.; Hochreiter, Sepp; Hong, Seungpyo; Hovig, Eivind; Hsueh, Ya-Chih; Hu, Zhiyuan; Huang, Justin K.; Huang, R. Stephanie; Hunyady, Laszlo; Hwang, Jinseub; Hwang, Tae Hyun; Hwang, Woochang; Hwang, Yongdeuk; Isayev, Olexandr; Walk, Oliver Bear Don't; Jack, John; Jahandideh, Samad; Ji, Jiadong; Jo, Yousang; Kamola, Piotr J.; Kanev, Georgi K.; Karacosta, Loukia; Karimi, Mostafa; Kaski, Samuel; Kazanov, Marat; Khamis, Abdullah M.; Khan, Suleiman Ali; Kiani, Narsis A.; Kim, Allen; Kim, Jinhan; Kim, Juntae; Kim, Kiseong; Kim, Kyung; Kim, Sunkyu; Kim, Yongsoo; Kim, Yunseong; Kirk, Paul D. W.; Kitano, Hiroaki; Klambauer, Gunter; Knowles, David; Ko, Melissa; Kohn-Luque, Alvaro; Kooistra, Albert J.; Kuenemann, Melaine A.; Kuiper, Martin; Kurz, Christoph; Kwon, Mijin; van Laarhoven, Twan; Laegreid, Astrid; Lederer, Simone; Lee, Heewon; Lee, Jeon; Lee, Yun Woo; Leppaho, Eemeli; Lewis, Richard; Li, Jing; Li, Lang; Liley, James; Lim, Weng Khong; Lin, Chieh; Liu, Yiyi; Lopez, Yosvany; Low, Joshua; Lysenko, Artem; Machado, Daniel; Madhukar, Neel; De Maeyer, Dries; Malpartida, Ana Belen; Mamitsuka, Hiroshi; Marabita, Francesco; Marchal, Kathleen; Marttinen, Pekka; Mason, Daniel; Mazaheri, Alireza; Mehmood, Arfa; Mehreen, Ali; Michaut, Magali; Miller, Ryan A.; Mitsopoulos, Costas; Modos, Dezso; Van Moerbeke, Marijke; Moo, Keagan; Motsinger-Reif, Alison; Movva, Rajiv; Muraru, Sebastian; Muratov, Eugene; Mushthofa, Mushthofa; Nagarajan, Niranjan; Nakken, Sigve; Nath, Aritro; Neuvial, Pierre; Newton, Richard; Ning, Zheng; De Niz, Carlos; Oliva, Baldo; Olsen, Catharina; Palmeri, Antonio; Panesar, Bhawan; Papadopoulos, Stavros; Park, Jaesub; Park, Seonyeong; Park, Sungjoon; Pawitan, Yudi; Peluso, Daniele; Pendyala, Sriram; Peng, Jian; Perfetto, Livia; Pirro, Stefano; Plevritis, Sylvia; Politi, Regina; Poon, Hoifung; Porta, Eduard; Prellner, Isak; Preuer, Kristina; Angel Pujana, Miguel; Ramnarine, Ricardo; Reid, John E.; Reyal, Fabien; Richardson, Sylvia; Ricketts, Camir; Rieswijk, Linda; Rocha, Miguel; Rodriguez-Gonzalvez, Carmen; Roell, Kyle; Rotroff, Daniel; de Ruiter, Julian R.; Rukawa, Ploy; Sadacca, Benjamin; Safikhani, Zhaleh; Safitri, Fita; Sales-Pardo, Marta; Sauer, Sebastian; Schlichting, Moritz; Seoane, Jose A.; Serra, Jordi; Shang, Ming-Mei; Sharma, Alok; Sharma, Hari; Shen, Yang; Shiga, Motoki; Shin, Moonshik; Shkedy, Ziv; Shopsowitz, Kevin; Sinai, Sam; Skola, Dylan; Smirnov, Petr; Soerensen, Izel Fourie; Soerensen, Peter; Song, Je-Hoon; Song, Sang Ok; Soufan, Othman; Spitzmueller, Andreas; Steipe, Boris; Suphavilai, Chayaporn; Tamayo, Sergio Pulido; Tamborero, David; Tang, Jing; Tanoli, Zia-ur-Rehman; Tarres-Deulofeu, Marc; Tegner, Jesper; Thommesen, Liv; Tonekaboni, Seyed Ali Madani; Tran, Hong; De Troyer, Ewoud; Truong, Amy; Tsunoda, Tatsuhiko; Turu, Gabor; Tzeng, Guang-Yo; Verbeke, Lieven; Videla, Santiago; Vis, Daniel; Voronkov, Andrey; Votis, Konstantinos; Wang, Ashley; Wang, Hong-Qiang Horace; Wang, Po-Wei; Wang, Sheng; Wang, Wei; Wang, Xiaochen; Wang, Xin; Wennerberg, Krister; Wernisch, Lorenz; Wessels, Lodewyk; van Westen, Gerard J. P.; Westerman, Bart A.; White, Simon Richard; Willighagen, Egon; Wurdinger, Tom; Xie, Lei; Xie, Shuilian; Xu, Hua; Yadav, Bhagwan; Yau, Christopher; Yeerna, Huwate; Yin, Jia Wei; Yu, Michael; Yu, MinHwan; Yun, So Jeong; Zakharov, Alexey; Zamichos, Alexandros; Zanin, Massimiliano; Zeng, Li; Zenil, Hector; Zhang, Frederick; Zhang, Pengyue; Zhang, Wei; Zhao, Hongyu; Zhao, Lan; Zheng, Wenjin; Zoufir, Azedine; Zucknick, Manuela (2019)
    The effectiveness of most cancer targeted therapies is short-lived. Tumors often develop resistance that might be overcome with drug combinations. However, the number of possible combinations is vast, necessitating data-driven ...
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    Crassulacean Acid Metabolism Abiotic Stress-Responsive Transcription Factors: a Potential Genetic Engineering Approach for Improving Crop Tolerance to Abiotic Stress 

    Amin, Atia B.; Rathnayake, Kumudu N.; Yim, Won C.; Garcia, Travis M.; Wone, Beate; Cushman, John C.; Wone, Bernard W. M. (2019)
    This perspective paper explores the utilization of abiotic stress-responsive transcription factors (TFs) from crassulacean acid metabolism (CAM) plants to improve abiotic stress tolerance in crop plants. CAM is a specialized ...
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    Data Registration with Ground Points for Roadside LiDAR Sensors 

    Yue, Rui; Xu, Hao; Wu, Jianqing; Sun, Renjuan; Yuan, Changwei (2019)
    The Light Detection and Ranging (LiDAR) sensors are being considered as new traffic infrastructure sensors to detect road users' trajectories for connected/autonomous vehicles and other traffic engineering applications. A ...
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    Deer Crossing Road Detection With Roadside LiDAR Sensor 

    Chen, Jingrong; Xu, Hao; Wu, Jianqing; Yue, Rui; Yuan, Changwei; Wang, Lu (2019)
    Deer crossing roads are a major concern of highway safety in rural and suburban areas in the United States. This paper provided an innovative approach to detecting deer crossing at highways using 3D light detection and ...
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    Do precipitation extremes drive growth and migration timing of a Pacific salmonid fish in Mediterranean-climate streams? 

    Kelson, Suzanne J.; Carlson, Stephanie M. (2019)
    Climate change is expected to increase weather extremes and variability, including more frequent weather whiplashes or extreme swings between severe drought and extraordinarily wet years. Shifts in precipitation patterns ...
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    Dynamics of Insulin Signaling in the Black-Legged Tick, Ixodes scapularis 

    Sharma, Arvind; Pooraiiouby, Rana; Guzman, Blanca; Vu, Preston; Gulia-Nuss, Monika; Nuss, Andrew B. (2019)
    Insulin-like peptides (ILPs) have been identified in several invertebrates, particularly insects, and work on these ILPs has revealed many roles including regulation of energy homeostasis, growth, development, and lifespan ...
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    Elav-Mediated Exon Skipping and Alternative Polyadenylation of the Dscam1 Gene Are Required for Axon Outgrowth 

    Zhang, Zhiping; So, Kevin; Peterson, Ryan; Bauer, Matthew; Ng, Henry; Zhang, Yong; Kim, Jung Hwan; Kidd, Thomas; Miura, Pedro (2019)
    Many metazoan genes express alternative long 3' UTR isoforms in the nervous system, but their functions remain largely unclear. In Drosophila melanogaster, the Dscam1 gene generates short and long (Dscam1-L) 3' UTR isoforms ...
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    Experimental platform for investigations of high-intensity laser plasma interactions in the magnetic field of a pulsed power generator 

    Ivanov, V. V.; Maximov, A. V.; Swanson, K. J.; Wong, N. L.; Sarkisov, G. S.; Wiewior, P. P.; Astanovitskiy, A. L.; Covington, A. M. (2018)
    An experimental platform for the studying of high-intensity laser plasma interactions in strong magnetic fields has been developed based on the 1 MA Zebra pulsed power generator coupled with the 50-TW Leopard laser. The ...
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    Formation control for autonomous robots with collision and obstacle avoidance using a rotational and repulsive force-based approach 

    Dang, Anh Duc; La, Hung Manh; Nguyen, Thang; Horn, Joachim (2019)
    In this article, we address a formation control problem for a group of autonomous robots to track a moving target in the presence of obstacles. In the proposed method, desired formations, which consist of virtual nodes ...
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    Fully automated sequence alignment methods are comparable to, and much faster than, traditional methods in large data sets: an example with hepatitis B virus 

    Catanach, Therese A.; Sweet, Andrew D.; Nguyen, Nam-Phuong D.; Peery, Rhiannon M.; Debevec, Andrew H.; Thomer, Andrea K.; Owings, Amanda C.; Boyd, Bret M.; Katz, Aron D.; Soto-Adarnes, Felipe N.; Allen, Julie M. (2019)
    Aligning sequences for phylogenetic analysis (multiple sequence alignment
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    GIA Model Statistics for GRACE Hydrology, Cryosphere, and Ocean Science 

    Caron, L.; Ivins, E. R.; Larour, E.; Adhikari, S.; Nilsson, J.; Blewitt, G. (2018)
    We provide a new analysis of glacial isostatic adjustment (GIA) with the goal of assembling the model uncertainty statistics required for rigorously extracting trends in surface mass from the Gravity Recovery and Climate ...
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    Hierarchical multi-population viability analysis 

    Leasure, Douglas R.; Wenger, Seth J.; Chelgren, Nathan D.; Neville, Helen M.; Dauwalter, Daniel C.; Bjork, Robin; Fesenmyer, Kurt A.; Dunham, Jason B.; Peacock, Mary M.; Luce, Charlie H.; Lute, Abby C.; Isaak, Daniel J. (2019)
    Population viability analysis (PVA) uses concepts from theoretical ecology to provide a powerful tool for quantitative estimates of population dynamics and extinction risks. However, conventional statistical PVA requires ...
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    Impacts of growing-season climate on tree growth and post-fire regeneration in ponderosa pine and Douglas-fir forests 

    Hankin, Lacey E.; Higuera, Philip E.; Davis, Kimberley T.; Dobrowski, Solomon Z. (2019)
    We studied the impacts of climate variability on low-elevation forests in the U.S. northern Rocky Mountains by quantifying how post-fire tree regeneration and radial growth varied with growing-season climate. We reconstructed ...